Imaging

light-sheet imaging, photo-conversion, cell lineage reconstruction

Light-sheet Imaging Atlas

Recent technological advancements in light-sheet microscopy have opened up exciting new opportunities for in toto imaging of whole developmental arcs at the cellular level. With the help of advanced fluorescent proteins, light-sheet microscopy enables the reconstruction of the entirety of embryonic development at a cellular level, allowing for image-based lineage reconstruction. 

OpenSiMView datasets

These two datasets were acquired on our OpenSiMView light-sheet microscope. You can explore the full timelapse image data here:

Zebrafish embryo imaged with a OpenSiMView microscope

Timelapse 1

ZMNS001

explore
Zebrafish embryo imaged with a OpenSiMView microscope

Timelapse 2

ZMNS002

explore

DaXi Datasets

These two datasets were acquired on our DaXi light-sheet microscope. You can explore the full timelapse image data here:

Zebrafish embryo imaged with DaXi light-sheet microscope

Timelapse 1

ZSNS001

explore
Zebrafish embryo imaged with DaXi light-sheet microscope

Timelapse 2

ZSNS002

explore
Zebrafish embryo imaged with DaXi light-sheet microscope. Zoom in on tail.

Timelapse 1 (tail)

ZSNS001_tail

explore

You can find the imaging and tracking data for Timelapse 1 here. Using our napari plugin for in silico, you can mark cells of interest and follow them over time. See video of demo below: